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// -*- mode: c++ -*-
#ifndef MESH_HPP
#define MESH_HPP
#include "header.hpp"
#include "cell.hpp"
class Mesh
{
public:
Mesh();
void build_surface_mesh(H5::H5File fp, H5::H5File ep, std::string datasetname);
void build_subsurface_mesh(H5::H5File fp);
void build_environment(H5::H5File ep, std::string datasetname, int flag);
void build_subsurface_environment(H5::H5File ep);
Cell* get_cell(int index, int flag);
void set_high_coordinate(int index, double value);
double get_high_coordinate(int index);
void set_low_coordinate(int index, double value);
double get_low_coordinate(int index);
void set_fuzz(double value);
int get_n_cells(int flag);
private:
int n_cells_subsurface;
int n_cells_surface;
double fuzz;
std::vector<Cell> subsurface_cells;
std::vector<Cell> surface_cells;
std::vector<double> high_coordinates;
std::vector<double> low_coordinates;
std::vector<std::vector<double>> nodes;
std::vector<std::vector<int>> element_node_indices;
void handle_subsurface_node_data(H5::H5File fp);
void build_subsurface_cells();
void handle_surface_node_data(H5::H5File fp);
void build_surface_cells(H5::H5File fp, std::string datasetname);
void get_mesh_metadata(H5::H5File fp, int ncol);
void read_velocity(H5::H5File fp, std::string groupname, std::string datasetname, int flag, int index);
void read_water_depth(H5::H5File fp, std::string datasetname);
void read_elevation(H5::H5File fp, std::string datasetname);
};
#endif
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